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The program 2DMatch was developed to find clusters of identical
amino acids between two protein sequences which conform to the
coiled-coil
secondary structure. The input to the program consists of two protein
sequences which have been aligned with
Matcher
The program is useful in predicting
cross-reactive epitopes, i.e. sites at which antibodies
produced against one protein also bind to the other (conformationally similar)
protein.
You can run 2DMatch from this page or download 2dmatch to your machine.
To run 2DMatch, type in or paste your protein sequences in the
sequence windows below.
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